@mastersthesis {83150, title = {Empirical Analyses of Forestry Interactions with Climate Uncertainty and Threatened Species}, year = {2022}, note = {In this doctoral dissertation, the author addresses two questions about climate change and forestry. In a changing climate, when you replant after harvesting timber, do you re-plant the same species as before, or do you plant a species you believe will do better in a changing climate? This question takes up the first half of the work, and is concerned with forests in the Eastern United States. The second question is concerned with the ideal widths of no-cut riparian zones in Oregon coastal forests. These are important questions with important answers. David J. Lewis was the major professor.}, pages = {147 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Applied Economics}, address = {Corvallis, Or.}, keywords = {Alsea River, Beaver Creek, climate, climate change, Coho salmon = Oncorhynchus kisutch, forestry, logging, North Umpqua River, Oregon Coast, riparian areas, Salmon River Estuary, Siletz River, Siuslaw River, South Umpqua River, Umpqua River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/37720m42t}, author = {Johnson, Kelsey K.} } @article {83133, title = {A systematic revision of the genus Juga from fresh waters of the Pacific Northwest, USA (Cerithioidea, Semisulcospiridae)}, journal = {European Journal of Taxonomy }, volume = {848}, year = {2022}, note = {This open-access publication gives a revised taxonomy of a ubiquitous genus of Pacific Northwest freshwater snails.}, pages = {1{\textendash}97}, doi = {https://doi.org/10.5852/ejt.2022.848.1993 }, url = {https://europeanjournaloftaxonomy.eu/index.php/ejt/article/view/1993}, author = {Strong, Ellen E. and Johnson, Paul D. and Johnson, Paul D. and Whelan, Nathan V.} } @article {83132, title = {UPRLIMET: UPstream Regional LiDAR Model for Extent of Trout in stream networks}, journal = {Scientific Reports (Nature Publishing Group)}, volume = {12}, number = {20266}, year = {2022}, note = {{\textquotedblleft}In conclusion, we offer a prediction model development and evaluation framework for how to systematically consider the upper distribution limit of fish that could be broadly applied to watersheds and fishes. Distribution boundaries are fundamental for species conservation as well as for understanding how species might respond to environmental change; policy makers and managers reference distribution maps to determine management decisions, policies, and regulations.{\textquotedblright} (p.12) }, month = {2022}, pages = {15 p.}, keywords = {Coffee Creek (Rogue), Ecola Creek, Fairy Creek, geographic distribution, Limpy Creek, mathematical modeling, North Fork Umpqua River, Panther Creek, temporal distribution, Umpqua River Basin, West Fork Smith River}, doi = {https://doi.org/10.1038/s41598-022-23754-0 }, author = {Penaluna, Brooke E. and Burnett, Jonathan D. and Christiansen, Kelly and Arismendi, Ivan and Johnson, Sherri L. and Griswold, Kitty and Holycross, Brett and Kolstoe, Sonja H.} } @article {83129, title = {Abundance trends for adult Pacific lamprey in western Oregon (USA): Historic declines, recent increases, and relative contributions from coastal rivers}, journal = {Transactions of the American Fisheries Society}, volume = {150}, number = {6}, year = {2021}, note = {Pacific lamprey is an anadromous species, spending most of its life in the ocean, but returning to coastal streams to spawn. In general, lamprey counts at dams tend to show steep declines in lamprey populations. How accurate is this information? The authors contrast dam counts with redd surveys in coastal streams and come up with a different conclusion. }, month = {2021, Nov.}, pages = {p.761-776}, keywords = {abundance, Bonneville Dam, Columbia River, depleted populations, Gold Ray Dam, mathematical modeling, North Umpqua River, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), population count, Rogue River, Umpqua River, Winchester Dam}, doi = {https://doi.org/10.1002/tafs.10326 }, author = {Clemens, Benjamin J. and Weeber, Matthew A. and Lewis, Mark and Jones, Michelle} } @article {83097, title = {Differences in mate pairings of hatchery- and natural-origin coho salmon inferred from offspring genotypes}, journal = {Integrative Organismal Biology}, volume = {3}, number = {1}, year = {2021}, note = {In this open-access article, the authors explore the relationship between genetics and mate selection, potentially quite important in managing hatchery salmonids. {\textquotedblleft}Using genotyping-by-sequencing, we identify single-nucleotide polymorphisms (SNPs) associated with variation in mate pairings from a natural context involving hatchery- and natural-origin coho salmon (Oncorhynchus kisutch){\textquotedblright} (from the Abstract).}, pages = {Article obab020}, keywords = {Calapooya Creek, Coho salmon = Oncorhynchus kisutch, genetics, hatchery salmonids, reproductive behavior, Umpqua River, wild salmonids}, doi = {https://doi.org/10.1093/iob/obab020}, url = {https://academic.oup.com/iob/article/3/1/obab020/6308823 }, author = {Auld, H. L. and Jacobson, D. P. and Rhodes, A. C. and Banks, M. A.} } @article {83048, title = {HF003: Stream Discharge and Bedload Accumulation in Gauged Watersheds at the South Umpqua Experimental Forest, Coyote Creek, 1963 to 1981 and 2001 to Present}, year = {2021}, note = {{\textquotedblleft}Stream discharge is collected on four small watersheds in the Coyote Creek drainage within the South Umpqua Experimental Forest in the southwest Oregon Cascades. . . Watersheds 1, 2, and 3 were harvested with differing silvicultural methods in summer 1971, and watershed 4 is the control. High resolution temporal data is provided as well as daily, monthly and annual summary data. . . Annual bedload accumulation totals from each of the four watersheds is also provided beginning 2001{\textquotedblright} (from the Abstract). This document links to data files and metadata.}, publisher = {Forest Service Research Data Archive}, address = {Fort Collins, Col.}, keywords = {Coyote Creek, hydrology, logging, natural resource management, nutrients, sediments, South Umpqua Experimental Forest, South Umpqua River, streamflow, terrestrial vegetation, water quality}, doi = {https://doi.org/10.2737/RDS-2020-0082 }, url = {https://www.fs.usda.gov/rds/archive/catalog/RDS-2020-0082 }, author = {Jones, Julia A. and Rothacher, Jack S.} } @mastersthesis {83198, title = {Understanding Freshwater Mussel Distribution, Abundance, and Demography in the South Umpqua River Basin, Oregon: Impacts of Land Use and Stream Hydraulics}, year = {2021}, note = {Despite their many valuable ecosystem services and their threatened status, freshwater mussels are not well studied. This Master{\textquoteright}s thesis represents an attempt to rectify this situation in the South Umpqua watershed. {\textquotedblleft}The percentage of forest cover within the drainage basin area was the best predictor of mussel abundance, and indicates that the cumulative impact of anthropogenic land use may be degrading mussel habitats. Our data also suggested a relationship between invasive Asian clams
(Corbicula fluminea) and suppressed mussel abundances{\textquotedblright} (from the Abstract) The author suggests monitoring of the invasive Asian clam, outreach to educate land owners about the importance of freshwater mussels, and wider riparian buffer zones to protect the mussels.}, pages = {61 p.}, school = {University of Oregon}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Environmental Studies Program}, address = {Eugene, Or.}, keywords = {Asian clams = Corbicula fluminea, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Cow Creek, cutthroat trout = Oncorhynchus clarki, depleted populations, geographical distribution, human impacts, introduced species, logging, Myrtle Creek, Pacific salmonids = Oncorhynchus spp., population biology, South Umpqua River, steelhead trout = Oncorhynchus mykiss, Western pearl mussel = Margaritifera falcata}, url = {https://scholarsbank.uoregon.edu/xmlui/handle/1794/26175 }, author = {Johnson, Laura} } @article {83126, title = {River network and reach-scale controls on habitat for lamprey larvae in the Umpqua River Basin, Oregon}, journal = {North American Journal of Fisheries Management}, volume = {40}, number = {6}, year = {2020}, note = {This paper reports on a study to document potential burrowing habitat for larval Pacific lamprey and Western brook lamprey in the Umpqua Basin. Additionally, the study examined water temperatures that were favorable for smallmouth, an introduced species that preys on lamprey. Finally, the authors looked at factors that support burrowing habitat heterogeneity on the reach scale.}, month = {2020, Dec.}, pages = {p.1400-1416}, keywords = {depleted populations, habitats, introduced species, juvenile fish, Little Wolf Creek, North Umpqua River, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), Slide Creek, Smallmouth Bass = Micropterus dolomieu, South Fork Calapooya Creek, South Umpqua River, Umpqua River, water temperature, Western brook lamprey = Lampetra richardsoni}, doi = {https://doi.org/10.1002/nafm.10487 }, author = {Jones, Krista L. and Dunham, Jason B. and O{\textquoteright}Connor, Jim E. and Keith, Mackenzie K. and Mangano, Joseph F. and Coates, Kelly and Mackie, Travis} } @mastersthesis {83036, title = {Understanding Freshwater Mussel Distribution, Abundance, and Demography in the South Umpqua River Basin, Oregon: Impacts of Land Use and Stream Hydraulics}, year = {2020}, note = {{\textquotedblleft}This thesis provides baseline information necessary for conservation and management of native mussel populations in the South Umpqua River basin. We documented all three PNW genera within the basin, but only one species (Margaritifera falcata) was widespread. Species richness and mussel abundances werel owest at downstream sites. We found widespread evidence of recent M. falcata reproduction, but the lower South Umpqua River populations are likely non-viable. The percentage of forest cover within the drainage basin area was the best predictor of mussel abundance, and indicates that the cumulative impact of anthropogenic land use may be degrading mussel habitats.{\textquotedblright} (from the Abstract) The invasive Asian clam may also have contributed to the decline of native mussels. This is a valuable look at an important indicator species.}, pages = {61 p.}, school = {University of Oregon}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Environmental Studies Program}, address = {Eugene, Or.}, keywords = {agriculture, Anodonta spp., aquatic invertebrates, Asian clam = Corbicula fluminea, bivalves, Cow Creek, depleted species, habitats, human impacts, hydrology, introduced species, land use, logging, molluscs, mussels, South Umpqua River, theses, Western pearlshell = Margaritifera falcata, Western ridged mussel = Gonidea angulate}, url = {https://scholarsbank.uoregon.edu/xmlui/handle/1794/26175}, author = {Johnson, Laura} } @proceedings {83027, title = {Anadromous population responses to multiple instream restoration treatments [abstract]}, volume = {55th}, year = {2019}, note = {This abstract describes work done by the Smith River Watershed Council to evaluate population trends for anadromous salmonids and lampreys after efforts to restore habitats in the West Fork of the Smith River. Restoration efforts seem to be paying off, with upward trends in populations.}, month = {2019, Mar. 5-8}, pages = {p.65}, address = {Bend, Or.}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, habitat restoration, land use, natural resource management, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), population count, steelhead trout = Oncorhynchus mykiss, West Fork Smith River, Western brook lamprey = Lampetra richardsoni}, url = {https://orafs.org/wp-content/uploads/2018/10/2019-Abstracts-Oregon-Chapter-of-the-American-Fisheries-Society-Annual-Meeting-3.pdf }, author = {Jenkins, Brian} } @article {82621, title = {Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem}, journal = {PLoS One}, volume = {14}, number = {7}, year = {2019}, note = {This article is a major scientific overview of the vulnerability of Pacific Coast anadromous salmonids to climate change. {\textquotedblleft}Nearly all listing units faced high exposures to projected increases in stream temperature, sea surface temperature, and ocean acidification. . . Anthropogenic factors, especially migration barriers, habitat degradation, and hatchery influence, have reduced the adaptive capacity of most steelhead and salmon populations. Enhancing adaptive capacity is essential to mitigate for the increasing threat of climate change. Collectively, these results provide a framework to support recovery planning that considers climate impacts on the majority of West Coast anadromous salmonids{\textquotedblright} (from the Abstract). Projections were made about Oregon coast coho salmon.}, pages = {e0217711}, edition = {2019, Jul. 24}, keywords = {Oregon Coast, Pacific salmonids = Oncorhynchus spp., Coho salmon = Oncorhynchus kisutch, climate change, depleted populations, ecosystem health, endangered species, habitats, hatcheries, human impacts, life history, ocean acidification, water temperatur}, doi = {https://doi.org/10.1371/journal.pone.0217711 }, url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0217711 }, author = {Crozier, Lisa G. and McClure, Michelle M. and Beechie, Tim and Bograd, Steven J. and Boughton, David A. and Carr, Mark and Cooney, Thomas D. and Dunham, Jason B. and Greene, Correigh M. and Haltuch, Melissa A. and Hazen, Elliott L. and Holzer, Damon M. and Huff, David O. and Johnson, Rachel C. and Jordan, Chris E. and Kaplan, Isaac C. and Lindley, Steven T. and Mantua, Nathan J. and Moyle, Peter B. and Myers, James M. and Nelson, Mark W. and Spence, Brian C. and Weitkamp, Laurie A. and Williams, Thomas H. and Willis-Norton, Ellen} } @article {83023, title = {Western Oregon adult winter steelhead and lamprey, 2018 redd survey data report}, volume = {no. 2018-09 }, year = {2019}, note = {{\textquotedblleft}This report provides a summary of results from winter steelhead spawning ground surveys conducted in Lower Columbia (Oregon side only) and Oregon Coast basins in 2018. Also included is a brief summary of lamprey data collected from the same monitoring efforts. . . Total winter steelhead redd estimates were approximately 98\% of both the 5- and 10-year averages for the Oregon Coast (OC) Distinct Population Segment (DPS). . . Regional patterns are apparent for winter steelhead redd density, proportion of hatchery origin spawners and spawn timing. Indices for Pacific Lamprey were lower in 2018 in the Lower Columbia compared to recent years, but above average in the Oregon Coast.{\textquotedblright} (p.1) Statistics are not given for Individual sites on the Oregon Coast other than the Umpqua River and the Nestucca River.}, pages = {23 p.}, institution = {Oregon Department of Fish and Wildlife

}, address = {Salem, Or.}, keywords = {depleted populations, Nestucca River, North Umpqua River, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), population count, reproductive behavior, steelhead trout = Oncorhynchus mykiss, Winchester Dam}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A814197 }, author = {Jacobsen, Ryan and Nott, Jonathan and Brown, Eric and Weeber, Matt and Lewis, Mark and Oregon. Dept. of Fish and Wildlife,} } @article {83020, title = {Two additional western United States freshwater snails named for Terrence Frest}, journal = {The Dredgings }, volume = {58 }, year = {2018}, note = {This article describes several molluscan species including some named after Terrence Frest. Among the snails described are two species of pebblesnails found in the Umpqua River drainage. Color photographs.}, pages = {p.3-5 }, keywords = {aquatic invertebrates, Fluminicola umpquaensis = Jade pebblesnail, Fluminicola fresti = Frest{\textquoteright}s pebblesnail, gastropods, genetics, molluscs, new species description, North Umpqua River, South Umpqua River, taxonomy}, url = {https://www.bily.com/pnwsc/web-content/Articles/Two-additional-western-United-States-freshwater-snails-named-for-Terrence-Frest.pdf}, author = {Johannes, Edward J.} } @article {83063, title = {Winter habitat condition of Oregon coast coho salmon populations, 2007-2014}, volume = {no.2018-01}, year = {2018}, note = {Winter habitat turns out to be an important, indeed, a limiting factor in coho salmon survival. Nicely complex habitat offers refuges that enable juvenile coho to survive winter freshets as well as providing {\textquotedblleft}a large freshwater survival buffer that may help coho persist though extended periods of poor ocean survival{\textquotedblright} (p.2). It is troubling to note that agricultural land, private forest land and urban lands had the greatest lack of complexity, highlighting the need for more education and other efforts in these areas.}, pages = {30 p.}, institution = {ODFW Aquatic Inventories Project}, address = {Salem, Or.}, keywords = {Alsea River, American beaver = Castor canadensis, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, geography, geology, habitats, hydrology, land use, Nehalem River, Nestucca River, population count, Salmon River, sediments, Siletz River, Siuslaw River, Tillamook Bay, Umpqua River, Yaquina River}, url = {https://tinyurl.com/3nsruf33 }, author = {Strickland, Matt J. and Anlauf-Dunn, Kara and Jones, Kim and Stein, Charles} } @article {77371, title = {An initial evaluation of potential options for managing riparian reserves of the Aquatic Conservation Strategy of the Northwest Forest Plan}, volume = {no.937}, year = {2016}, note = {The Northwest Forest Plan was adopted in 1994. Part of the Plan involved developing an Aquatic Conservation Strategy {\textquotedblleft}to maintain and improve the ecological processes in aquatic ecosystems for Pacific salmon (Oncorhynchus spp.), other native fish, aquatic and riparian-dependent organisms, and water quality{\textquotedblright} (from the Executive Summary).The Plan met this goal by using riparian reserves, areas near streams in which logging was banned to the distance of two tree-heights (220 feet) on fish-bearing streams, and one tree-height on streams without fishes. The width of the reserves was considered to be an interim measure, but the issue has not been subsequently revisited. This report is an attempt to re-assess the minimum widths of riparian reserves. The authors offer an option that uses new techniques such as tree-tipping, which would enable forest managers to reduce the width of riparian boundaries and permit logging closer to streams without reducing water quality.}, month = {2016, Apr.}, pages = {97 p.}, keywords = {Siuslaw River, Smith River, North Umpqua River, Myrtle Creek, Coquille River, McKenzie River, Applegate River, terrestrial vegetation, riparian areas, habitats, water quality, water temperature, fishes, ecosystem health, environmental law and policy,}, url = {https://www.fs.usda.gov/research/treesearch/50788}, author = {Reeves, Gordon H. and Pickard, Brian R. and Johnson, K. Norman and U. S. Department of Agriculture. Forest Service. Pacific Northwest Research Station,,} } @article {80501, title = {Molecular phylogenetics of the freshwater gastropod genus Juga (Cerithioidea: Semisulcospiridae)}, journal = {Biochemical Systematics and Ecology}, volume = {65}, year = {2016}, note = {New techniques in molecular biology have revolutionized invertebrate taxonomy. Many families and genera have been reorganized. This article represents a beginning examination of the freshwater snails in the genus Juga. Emphasis is on the Sacramento River, but a genetic analysis was done on 103 specimens, including some from Oregon. The authors find that much of the classification of Juga is questionable, and that the clades identified {\textquotedblleft}correspond closely to geography. Some geographically and genetically distinctive populations do not fit in any named species.{\textquotedblright} (from the Abstract)}, pages = {p.158-170}, keywords = {Umpqua River Basin, Brown Juga = Juga spp.. aquatic invertebrates, molluscs, gastropods, taxonomy, genetics, molecular biology}, doi = {http://dx.doi.org/10.1016/j.bse.2016.01.004 }, author = {Campbell, David C. and Clark, Stephanie A. and Johannes, Edward J. and Lydeard, Charles and Frest, Terrence J.} } @article {80406, title = {Self-organization of river channels as a critical filter on climate signals}, journal = {Science}, volume = {352}, number = {6286}, year = {2016}, note = {{\textquotedblleft}Spatial and temporal variation in rainfall are hypothesized to influence landscape evolution through erosion and sediment transport by rivers. However, determining the relation between rainfall and river dynamics requires a greater understanding of the feedbacks between flooding and a river{\textquoteright}s capacity to transport sediment{\textquotedblright} (from the Abstract). Do bigger floods mean more erosion? Not necessarily, say the authors, who find more river channel change in moderate inundations than in large floods.}, month = {2016, May 5}, pages = {p.694-697}, keywords = {Umpqua River, hydrology, climate, precipitation, coastal hazards, flooding, geology, sediments,}, doi = {doi: 10.1126/science.aad3348 }, author = {Phillips, Colin B. and Jerolmack, Douglas J.} } @article {76921, title = {Community clusters of tsunami vulnerability in the US Pacific Northwest}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {112}, number = {17}, year = {2015}, note = {{\textquotedblleft}We present an analytical framework for understanding community-level vulnerability to tsunamis that integrates population exposure, demographic sensitivity, and evacuation potential. We identify three types of communities along the US Pacific Northwest coast that are directly threatened by tsunamis associated with a Cascadia subduction zone earthquake: (i) demographically diverse with low numbers of exposed people, (ii) high numbers of exposed populations but sufficient time to evacuate, and (iii) moderate numbers of exposed populations but insufficient time to evacuate.{\textquotedblleft} (p.5354) The authors identified Seaside as the most vulnerable community on the Oregon Coast. This is an open-access article.}, month = {2015, Apr.15}, pages = {p.5354-55359}, keywords = {Bay City (Or.), coastal hazards, Coos Bay (Or.), Depoe Bay (Or.), Dunes City (Or.), earthquakes, environmental policy and law, Florence (Or.), Gold Beach (Or.), Lincoln City (Or.), Lincoln County (Or.), Newport (Or.), North Bend (Or.), Port Orford (Or.), Reedsport (Or.), Seaside (Or.), Tillamook (Or.), Toledo (Or.), tsunamis, Waldport (Or.), Yachats (Or.)}, doi = {www.pnas.org/cgi/doi/10.1073/pnas.1420309112 }, url = {https://www.pnas.org/content/112/17/5354}, author = {Wood, Nathan J. and Jones, Jeanne and Spielman, Seth and Schmidtlein, Matthew C.} } @article {77171, title = {Evaluation of probabilistic sampling designs for estimating abundance of multiple species of migratory fish using video recordings at fishways}, journal = {North American Journal of Fisheries Management}, volume = {5}, number = {4}, year = {2015}, note = {{\textquotedblleft}Fifteen years of video census data from a fishway at Winchester Dam on the North Umpqua River, Oregon, were used to evaluate sampling designs to estimate abundance of spring- and fall-run Chinook Salmon Oncorhynchus tshawytscha, summer- and winter-run steelhead O. mykiss , Coho Salmon O. kisutch, and Pacific Lamprey Entosphenus tridentatus.{\textquotedblright} (from the Abstract)}, pages = {p.818-826}, keywords = {abundance, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, mathematical modeling, North Umpqua River, Pacific lamprey = Entosphenus tridentatus, population count, statistics, steelhead trout = Oncorhynchus mykiss, Umpqua River, Winchester Dam}, doi = {DOI: 10.1080/02755947.2015.1040562}, author = {McCormick, Joshua L. and Jackson, Laura S. and Carr, Fabian M. and Meyer III, Daniel H.} } @article {77151, title = {Modeling of Chinook Salmon Runs on the North Umpqua River}, year = {2015}, note = {This is a collection of papers, presentations and data files reflecting an undergraduate research project at Oregon State University. The project focuses on Spring run Chinook salmon in the Umpqua River. Runs at present are 6-7\% of historical amounts. Accurate data and good models are important and can be used to help determine {\textquotedblleft}preferable water conditions during their upstream migration on the Umpqua River.{\textquotedblright} (from the Abstract)}, address = {Corvallis, Or.}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, mathematical modeling, North Umpqua River, population count, Umpqua River, Winchester Dam}, url = {https://ir.library.oregonstate.edu/concern/defaults/rx913r43j}, author = {Jordan, Scott} } @article {77026, title = {Oregon Lake Watch, 2014 annual report}, volume = {no.38}, year = {2015}, note = {{\textquotedblleft}The Oregon Lake Watch (OLW) volunteer monitoring program is now in its second year of operation, continuing its focus on early detection of aquatic invasive species (AIS), with a secondary focus on lake water quality.{\textquotedblright} (p.2) Three aquatic invasive species were found in Cooper Creek Reservoir, but none at Diamond Lake or Ben Irving Reservoir.}, pages = {27 p.}, institution = {Portland State University. Center for Lakes and Reservoirs}, address = {Portland, Or.}, keywords = {aquatic invertebrates, aquatic vegetation, Asian clams = Corbicula fluminea, Ben Irving Reservoir, Berry Creek, Brazilian elodea = Egeria densa, Cooper Creek, Cooper Creek Reservoir, Diamond Lake, Eurasian watermilfoil = Myriophyllum spicatum, introduced species, North Umpqua River, Umpqua River Basin, water quality, water temperature}, url = {https://pdxscholar.library.pdx.edu/centerforlakes_pub/38/}, author = {Jordan, Meredith and Miller, Rich and Strecker, Angela L. and Portland State University. Center for Lakes and Reservoirs,} } @article {76971, title = {Assessment of western Oregon adult winter steelhead {\textendash} redd surveys 2014}, volume = {no. OPSW-ODFW-2014-09}, year = {2014}, note = {{\textquotedblleft}This report provides a summary of results from winter steelhead spawning ground surveys conducted in Oregon Coast and Lower Columbia basins in 2014, and also includes a brief summary of lamprey data collected from the same monitoring efforts.{\textquotedblright} (from the Summary, p.1)}, month = {2014, Dec.}, pages = {20 p.}, keywords = {Alsea River, depleted populations, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), population count, reproductive behavior, spatial distribution, steelhead trout = Oncorhynchus mykiss, temporal distribution, Tidewater (Or.), Umpqua River Basin}, url = {https://tinyurl.com/bdhm44vb}, author = {Jacobsen, Ryan and Nott, Jonathan and Brown, Eric and Weeber, Matt and Lewis, Mark} } @article {76606, title = {Invasive crayfish as vectors of mercury in freshwater food webs of the Pacific Northwest}, journal = {Environmental Toxicology and Chemistry}, volume = {33 }, number = {11}, year = {2014}, note = {Crayfish are important participants in food webs {\textendash} they eat a lot, and in turn are important prey for many creatures. This is an interesting look at crayfish uptake of mercury in aquatic environments in western Oregon. The authors compare the native signal crayfish with the introduced ringed crayfish and the introduced red swamp crayfish. Interestingly, members of the native species seem to have the highest concentrations of mercury in their tissues. Also, {\textquotedblleft}Crayfish from the Umpqua watershed had the highest overall [total mercury] THg concentrations, exceeding those in both the Rogue {\textellipsis}and Willamette watersheds.{\textquotedblright} (p.2641) The authors note the Bonanza Mine in the Umpqua watershed, as well as a recent increase in gold mining dredging which may have stirred up mercury-tainted sediments as possible contributing factors.}, month = {2014}, pages = {p. 2639{\textendash}2645}, keywords = {heavy metals, introduced species, mercury, mining, North Umpqua River, predation, Red swamp crayfish = Procambarus clarkia, Ringed crayfish = Orconectes neglectus, Rogue River Basin, Signal crayfish = Pacifastacus leniusculus, South Umpqua River, Umpqua River Basin, water pollution, Willamette River Basin}, doi = {10.1002/etc.2727}, author = {Johnson, Branden L. and Willacker, James J. and Eagles-Smith, Collin A. and Pearl, Christopher A. and Adams, Michael J.} } @article {55031, title = {Movements, habitat use, and population characteristics of adult Pacific lamprey in a coastal river}, journal = {Environmental Biology of Fishes}, volume = {97}, number = {8}, year = {2014}, note = {Before they spawn, mature Pacific lamprey spend about a year in freshwater. What they do during that year was investigated in this study, which used radio-telemetry and followed tagged fishes. Distinct behavior and migration patterns were observed. Interestingly, some lamprey spawned in multiple locations, separated by as much as 16 kilometers, and with multiple spawners. }, month = {2014, Aug.}, pages = {p.939-953}, keywords = {depleted populations, geographical distribution, habitats, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), reproductive behavior, Smith River, temporal distribution, Umpqua River Basin}, doi = {10.1007/s10641-013-0196-5}, author = {Starcevich , Steven J. and Gunckel, Stephanie L. and Jacobs, Steven E.} } @article {83093, title = {Water quality and algal conditions in the North Umpqua River, Oregon, 1995{\textendash}2007, and their response to Diamond Lake restoration:}, volume = {no. 2014-1098 }, year = {2014}, note = {{\textquotedblleft}Prepared in cooperation with Douglas County and the U.S. Forest Service.{\textquotedblright} By the early 1990s, scientists were concerned about algal blooms in the North Umpqua River. Algal blooms in Diamond Lake and Lemolo Lake were possible sources of the problem. When plans were made to draw down Diamond Lake and re-set the food web by killing the invasive Tui chub, an opportunity was seen for looking at conditions in the North Umpqua River, in particular relating to algal blooms. The river was surveyed in 2005 before the drawdown, and in 2007, after Diamond Lake was restored. This report focuses on harmful algae blooms in the North Umpqua River, the causes of the blooms, and their effects on the ecosystem.}, pages = {89 p.}, institution = {U.S. Geological Survey}, address = {Reston, Va.}, keywords = {Anabaena spp. = blue-green algae, Boulder Creek, Calf Creek, Canton Creek, Cladophora spp. = green algae, Clearwater River, Copeland Creek, Diamond Lake, harmful algae blooms, Lake Creek, Lemolo Lake, Little River, nitrogen, North Umpqua River, Panther Creek, pH, Rock Creek, Steamboat Creek, Susan Creek, Toketee Lake, Tui chub = Gila bicolor, water quality, water temperature, Wright Creek}, doi = {http://dx.doi.org/10.3133/ofr20141098 }, url = {https://pubs.usgs.gov/of/2014/1098/pdf/ofr2014-1098.pdf }, author = {Carpenter, Kurt D. and Anderson, Chauncey W. and Jones, Mikeal E.} } @article {52416, title = {Adapting to climate change on the Oregon coast: lines in the sand and rolling easements}, journal = {Journal of Environmental Law and Litigation}, volume = {28}, year = {2013}, note = {In this important article, the authors argue that Oregon should be working to strengthen its laws now in order to have the flexibility and legal framework to enable it to adapt to a changing climate and sea level rise. {\textquotedblleft}Processes are needed to decide what infrastructure will be replaced and what will not before these inevitable events occur. . . . Planning can ensure that shoreline armoring does not eliminate public access along the shore or total loss of sand on Oregon{\textquoteright}s beaches. Planning tools can make clear that the public access boundary does migrate inland, even if the shoreline migrates onto an inland parcel across which the public does not currently have access.{\textquotedblright} (p.514)}, pages = {p.447-514}, keywords = {Alsea Bay, Alsea Spit, beaches, Cape Lookout State Park, climate change, coastal hazards, environmental law and policy, environmental policy and law, erosion, flooding, Netarts Bay, New River, physical modifications, riprap, sand spits, shorelines, The Capes, Tillamook Bay, tsunamis, wave heights}, url = {https://scholarsbank.uoregon.edu/xmlui/handle/1794/17378}, author = {Johnson, Courtney B. and Schell, Steven R.} } @article {36511, title = {Umpqua Coho Salmon Genetic Pedigree}, year = {2013}, note = {{\textquotedblleft}Data, pedigrees, reports and manuscripts herein are from an investigation conducted with coho salmon of the Umpqua River in southern Oregon from 2001-2009. They relate to a study investigating several areas of uncertainty about the use of salmon hatcheries to increase the abundance of wild populations{\textellipsis}{\textquotedblright} (from the Abstract) Four files are included here: a general description, a file of metadata for field names, a file of genetic data, and a completion report.}, keywords = {Calapooya Creek, Coho salmon = Oncorhynchus kisutch, dataset, fecundity, genetics, hatchery salmonids, Rock Creek Fish Hatchery, Umpqua River, wild salmonids}, url = {https://ir.library.oregonstate.edu/concern/datasets/8336h610p}, author = {Banks, Michael A. and Blouin, Michael S. and Moyer, Gregory R. and Theriault, Veronique and Whitcomb, Amelia and Loomis, David and Jackson, Laura S.} } @article {26936, title = {Amphibian Distribution in Wadeable Streams and Ponds in Western and Southeast Oregon, 2009-2010}, year = {2011}, note = {Includes colored distribution maps. "During four years of surveys, crews identified six amphibian species in Burnt Creek, South Umpqua River basin, the greatest species richness observed at a single survey location." (p.18)}, pages = {21 p.}, institution = {Oregon Dept. of Fish and Wildlife}, address = {Corvallis, Or.}, keywords = {Alsea River, American bullfrog = Rana catesbeiana, amphibians, Burnt Creek, Coastal giant salamander = Dicamptodon tenebrosus, Coastal tailed frog = Ascaphus truei, depleted populations, Foothill yellow-legged frog = Rana boylii, geographic distribution, introduced species, Lower Umpqua River, Nestucca River, Northwestern salamander = Ambystoma gracile, population count, Red-legged frog = Rana aurora, Rough-skinned newt = Taricha granulosa, Siuslaw River, Smith River, South Umpqua River, spatial distribution, species list}, url = {https://www.dfw.state.or.us//conservationstrategy/docs/2011_Amphibian_Progress_Report.pdf}, author = {Tippery, Sharon E. and Jones, Kim K.} } @inbook {26866, title = {Lower Columbia and Oregon coast}, booktitle = {Oregon Archaeology}, year = {2011}, note = {A contemporary overview of the archeology of the Oregon Coast, explaining the unique problems archeologists face associated with earthquakes, subsidence, tsunamis and sea level rise. Well illustrated.}, pages = {p.210-283}, publisher = {Oregon State University Press}, organization = {Oregon State University Press}, chapter = {Ch. 4}, address = {Corvallis, Or.}, keywords = {archeology, Bandon Sandspit, bob Creek, Boiler Bay, Cape Perpetua, Coos Bay, Coquille River, Graveyard Point, Half Moon Weir, K{\textquoteright}ama{\textquoteright}cdun, Necanicum River, Neptune, Netarts Sandspit, Palmrose, Par-Tee, Seal Rock, Siltcoos Lake, Siuslaw River, Spencer Bridge, Tahkenitch Lake, Umpqua River, Umpqua-Eden, Whale Cove, Yaquina Falls, Yaquina Head, Yaquina River}, author = {Aikens, C. Melvin and Connolly, Thomas J. and Jenkins, Dennis L.} } @article {26931, title = {Reduced reproductive success of hatchery coho salmon in the wild: insights into most likely mechanisms}, journal = {Molecular Ecology}, volume = {20}, number = {9}, year = {2011}, note = {Hatchery salmonids have been shown to have less reproductive success than wild salmonids. This phenomenon has been extensively documented in steelhead. In this paper, the authors examine a hatchery program on the North Umpqua River to see if hatchery coho salmon also are less successful at breeding. Mature coho are less successful, particularly males, although hatchery jack salmon were about as successful as wild jacks. Even the most up-to-date hatchery practices such as using wild brood stock and allowing mating by pairs of fish were not enough to overcome the disadvantage suffered by hatchery coho. Possible mechanisms for the lack of reproductive success in hatchery coho are explored.}, month = {2011, May}, pages = {p.1860-1869}, keywords = {Calapooya Creek, Coho salmon = Oncorhynchus kisutch, Elk Creek, fecundity, genetics, hatcheries, hatchery salmonids, Nonpareil Dam, North Umpqua River, reproductive behavior, Rock Creek Hatchery, Umpqua River, wild salmonids, Winchester Dam}, doi = {10.1111/j.1365-294X.2011.05058.x}, author = {Th{\'e}riault, V{\'e}ronique and Moyer, Gregory R. and Jackson, Laura S. and Blouin, Michael S. and Banks, Michael A.} } @article {26691, title = {Distribution of amphibians in wadeable streams and ponds in western and southeast Oregon}, volume = {no. 2009-02}, year = {2009}, pages = {26 p.}, keywords = {amphibians, Dixon Creek, Foothill yellow-legged frog = Rana boylii, frogs, North Umpqua River, Rough-skinned newt = Taricha granulosa, salamanders}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A957177}, author = {Bangs, Brian L. and Jones, Kim K. and Oregon. Fish Division and U.S. Fish and Wildlife Service, and Oregon Plan for Salmon and Watersheds,} } @book {83008, title = {Freshwater Mussels of the Pacific Northwest}, year = {2009}, note = {2nd edition. Freshwater mussels are among the most endangered animals on earth. Over 70\% of all freshwater mussel species in North America are considered threatened or endangered, and 35 species are believed to be extinct. Freshwater mussels serve as important bioindicators, being sensitive to stream temperatures, dissolved oxygen, sedimentation and pollution. This valuable guide will aid in awareness of the value of these species, as well as in identification.}, pages = {51 p.}, publisher = {Xerxes Society for Invertebrate Conservation}, organization = {Xerxes Society for Invertebrate Conservation}, edition = {2nd}, chapter = {51 p.}, address = {Portland, Or. }, keywords = {anatomy, aquatic invertebrates, bivalves, general, life history information, mollusks, mussels, taxonomy, water quality}, url = {https://xerces.org/sites/default/files/2018-05/09-002_02_XercesSoc_Freshwater-Mussels-of-the-PNW_web.pdf}, author = {Nedeau, Ethan Jay and Smith, Allan K. and Stone, Jen and Jepsen, Sarina} } @mastersthesis {26726, title = {Patterns of Natural Selection and Demography in Coastal Oregon Coho Salmon (Oncorhynchus kisutch) Populations: Evidence from Neutral and Olfactory Receptor Gene-Linked Markers}, year = {2009}, note = {"For Pacific salmon, the evolution of local adaptations depends upon the species{\textquoteright} propensity to return, or {\textquotedblleft}home{\textquotedblright}, to natal streams at time of reproduction. Pacific salmon use olfactory cues to guide homing behavior, yet little is known about the genetics of olfaction in salmon. In this study, I use putatively neutral microsatellite markers to estimate demographic parameters and describe the population genetic structure of Oregon Coastal coho salmon (Oncorhynchus kisutch). . . I then used genomic sequence data from nine species of salmon and trout to infer the evolutionary history for eight olfactory receptor genes. . . Finally, I used molecular markers linked to olfactory receptor genes to test for a signal of selection among coho salmon populations from different rivers." (from the Abstract) Found the Coos Bay salmon were the major source of straying in the south coast, while Nehalem River salmon did most of the straying on the north coast. Major professor was Michael A. Banks.}, pages = {111 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {Coho salmon = Oncorhynchus kisutch, genetics, geographic distribution, population biology, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/gh93h230k}, author = {Johnson, Marc Aaron} } @inbook {36156, title = {Spawning distribution and habitat use of adult Pacific and Western brook lampreys in Smith River, Oregon}, booktitle = {Biology, Management and Conservation of Lampreys in North America}, series = {American Fisheries Society Symposium }, volume = {no.72}, year = {2009}, note = {"The objectives of this study were to (1) determine distribution of spawning Pacific and western brook lampreys in the Smith River basin, (2) describe redds of both species, and (3) describe associations of spawning adults in relation to habitat unit- and reach-scale habitat characteristics." The authors theorize about why lamprey prefer one spawning site over another. Habitat connectivity may be an important factor. Those interested in lampreys will find the whole volume in which this article is found worth reading. This was originally published in 2006 as ODFW Information Reports 2006-1, which is available at: https://digital.osl.state.or.us/islandora/object/osl:18144 }, pages = {p.173-189}, publisher = {American Fisheries Society}, organization = {American Fisheries Society}, address = {Bethesda, Md.}, keywords = {habitats, Halfway Creek, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), Smith River, South Fork Smith River, South Sister Creek, spatial distribution, statistical analysis, temporal distribution, Vincent Creek, West Fork Smith River, Western brook lamprey = Lampetra richardsoni}, author = {Gunckel, Stephanie L. and Jones, Kim K. and Jacobs, Steven E.}, editor = {Larry R Brown and Chase, Shawn D. and Mesa, Matthew G. and Beamish, Richard J. and Moyle, Peter B.} } @article {26641, title = {Genetic structure, migration, and patterns of allelic richness among coho salmon (Oncorhynchus kisutch) populations of the Oregon coast}, journal = {Canadian Journal of Fisheries and Aquatic Sciences}, volume = {65}, number = {7}, year = {2008}, note = {Studied genotypic data from eight microsatellite loci to characterize Oregon coastal coho salmon. "The Coos, Umpqua, Smith and Coquille rivers appear to form a southern group, whereas the Nehalem, Tillamook, Wilson, Necanicum, Nestucca, Trask, and Salmon rivers form a loosely defined northern group.""...the coastal lakes flanking the mouth of the Umpqua River form a clade together with the lower reaches of this river." (p.1278) }, pages = {p.1274-1285}, keywords = {Coho salmon = Oncorhynchus kisutch, genetics, geographic distribution, population biology}, doi = {10.1139/F08-044}, author = {Johnson, Marc Aaron and Banks, Michael A.} } @article {26661, title = {Status of winter rearing habitat in four coho population units, 2007}, volume = {no. OPSW-ODFW-2008-7}, year = {2008}, note = {Winter surveys of Nehalem, Siuslaw, Coquille and South Umpqua Rivers to assess habitat, describe differences between winter and summer habitat, locate possible future survey sites and evaluate utility of winter habitat surveys. Habitat is most limiting to coho survival in the winter, thus winter surveys are more useful. The model used predicted that the Nehalem and Siuslaw basins could support the highest density of juvenile coho, and the South Umpqua the least. }, pages = {28 p.}, address = {Corvallis, Or.}, keywords = {Coho salmon = Oncorhynchus kisutch, Coquille River, Nehalem River, Siuslaw River, South Umpqua River}, url = {https://digital.osl.state.or.us/islandora/object/osl:18185}, author = {Romer, Jeremy D. and Anlauf, Kara Janaye. and Jones, Kim K. and Oregon. Dept. of Fish and Wildlife, and Oregon Plan for Salmon and Watersheds,} } @book {26406, title = {Spawning distribution and habitat use of adult Pacific and western brook lamprey in Smith River, Oregon}, series = {Information Reports (Oregon. Fish Division)}, number = {2006-1}, year = {2006}, note = {"This study addresses information needs pertaining to distribution and habitat use in addition to providing basic descriptive ecology. Our goal was to identify habitat variables associated with spawning Pacific and western brook lamprey in order to infer distribution throughout coastal Oregon." (from Introduction, p.1). Colored maps, charts, photographs. This was subsequently reprinted as American Fisheries Society Symposium no.72 (2009).}, month = {2006}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {Corvallis, Or.}, keywords = {endangered species, habitats, Halfway Creek, life history information, Lower Umpqua River, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), reproductive behavior, Smith River, South Fork Smith River, South Sister Creek, spatial distribution, Vincent Creek, West Fork Smith River, Western brook lamprey = Lampetra richardsoni}, url = {https://digital.osl.state.or.us/islandora/object/osl:18144}, author = {Gunckel, Stephanie L. and Jones, Kim K. and Jacobs, Steven E.} } @book {26296, title = {Smith River steelhead and coho monitoring verification study, 2004}, series = {Monitoring Report / Oregon Plan for Salmon and Watersheds}, number = {OPSW-ODFW-2005-6}, year = {2005}, note = {Snorkling surveys were more accurate than electrofishing in this study. The relative merits of the two population count techniques are discussed and statistics for the area are given.}, month = {2005}, pages = {19 p.}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {Salem , Or.}, keywords = {Coho salmon = Oncorhynchus kitsutch, cutthroat trout = Oncorhynchus clarki, Halfway Creek, methodology, North Fork Smith River, Panther Creek, population count, salmonid species, Scare Creek, Smith River, South Fork Smith River, South Sister Creek, steelhead trout = Oncorhynchus mykiss, Vincent Creek}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A18575}, author = {Jepsen, David Brice} } @article {26171, title = {Soil Survey of Douglas County Area, Oregon}, year = {2004}, note = {1 case (2 v., 91 folded p. of plates) : illustrations (some in color), maps (some in color). Only the text (not the aerial photos) is available online.}, pages = {589 p.}, institution = {United States Department of Agriculture. Natural Resources Conservation Service}, keywords = {soils}, url = {https://permanent.access.gpo.gov/lps59612/or649_text.pdf}, author = {Johnson, David R. and Haagen, John T. and Terrell, Alan C.} } @article {26111, title = {Cascadia tsunami deposit database [electronic resource]}, volume = {no.03-13}, year = {2003}, note = {"The Cascadia Tsunami Deposit Database contains data on the location and sedimentological properties of tsunami deposits found along the Cascadia margin." (from the Abstract)}, pages = {24 p.}, institution = {U.S. Geological Survey}, address = {[Menlo Park, Calif.]}, keywords = {bibliography, coastal hazards, earthquakes, geology, landslides, paleosciences, sediment data, tsunamis}, url = {https://pubs.usgs.gov/publication/ofr0313}, author = {Peters, Robert and Jaffe, Bruce and Gelfenbaum, Guy and Peterson, Curt} } @book {25966, title = {Calibration of estimates of coho spawner abundance in the Smith River Basin, 2001}, series = {Monitoring Report / Oregon Plan for Salmon and Watersheds}, number = {no. OPSW-ODFW-2002-06}, year = {2002}, note = {It seems that mark-recapture surveys undercount fish. This study is working on a way to better calibrate spawning estimates.}, month = {2002}, pages = {14 p.}, publisher = {Coastal Salmonid Inventory Project, Western Oregon Research and Monitoring Program, Oregon Dept. of Fish and Wildlife}, organization = {Coastal Salmonid Inventory Project, Western Oregon Research and Monitoring Program, Oregon Dept. of Fish and Wildlife}, address = {Corvallis, Or.}, keywords = {abundance, Beaver Creek, Big Creek (Smith River), Clegham Creek, Coho salmon = Oncorhynchus kisutch, Coon Creek, Crane Creek, Elk Creek, Gold Creek, Halfway Creek, Herb Creek, Marsh Creek, Moore Creek, North Sister Creek, Panther Creek, population count, Scare Creek, Smith River, Smith River Falls, South Sister Creek, Spring Creek, statistics, Summit Creek, Tip Davis Creek, Vincent Creek}, url = {https://digital.osl.state.or.us/islandora/object/osl:18572}, author = {Jacobs, Steve} } @proceedings {49721, title = {An effective method of utilizing the Internet to enhance watershed management}, year = {2000}, note = {This 2000 paper looks at the Internet as a tool to help agencies managing watersheds communicate and coordinate projects. It gives the Umpqua River Basin as an example of a locality that uses the internet to help with inter-agency coordination. p.1-11 in the Internet Applications section.}, pages = {11 p.}, publisher = {American Society of Civil Engineers}, address = {Fort Collins, Co.}, keywords = {comunication, ecosystem health, Partnership for the Umpqua Rivers, Umpqua River Basin, watershed councils, watersheds}, doi = {http://dx.doi.org/10.1061/40499(2000)85}, author = {Johnson, Amy}, editor = {Flug. Marshall and Frevert, Donald K. and David W Watkins, David W. and American Society of Civil Engineers, and Environmental and Water Resources Institute (U.S.),} } @book {25701, title = {Bay Clam Data Series Report: 1997}, year = {1999}, note = { In addition to statistics on bay clams, the report includes information about a program to replant native Olympia oysters in Netarts and Alsea bays and to enhance native oyster habitat in Yaquina Bay.}, pages = {18 p.}, publisher = {Oregon Dept. of Fish and Wildlife, Marine Region}, organization = {Oregon Dept. of Fish and Wildlife, Marine Region}, chapter = {18 pp.}, address = {Newport, Or.}, keywords = {Alsea Bay, aquaculture, aquatic invertebrates, biological, bivalves, Butter clam = Saxidomus giganteus, catch statistics, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille River estuary, Gaper clam = Tresus capax, introduced species, Littleneck clam = Leukoma staminea, Manila clam = Venerupis japonica, molluscs, Netarts Bay, recreational fisheries - shellfish, Siuslaw River estuary, Softshell clam = Mya arenaria, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/h415pb27h}, author = {Johnson, John A. and Oregon. Dept. of Fish and Wildlife,} } @book {25706, title = {Status review of coastal cutthroat trout from Washington, Oregon, and California}, series = {NOAA Technical Memorandum NMFS-NWFSC}, number = {no.37}, year = {1999}, note = {The Biological Review Team concluded that coastal stocks of cutthroat trout were not presently at risk of extinction. Appendix 1-A gives the known history of hatchery releases in streams and lakes.}, month = {1999}, pages = {292 p.}, publisher = {Northwest Fisheries Science Center}, organization = {Northwest Fisheries Science Center}, address = {[Seattle, Wash.]}, keywords = {Alsea Fish Hatchery, Alsea River, Chetco River, Coos Bay, Coos River, Coquille River, cutthroat trout = Oncorhynchus clarki, Devils Lake, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, history, Kilchis River, life history information, Miami River, Millicoma River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Rogue River, Salmon River, salmonid species, Sand Creek, Siltcoos Lake, Siuslaw River, Smith River, statistics, Tahkenitch Lake, Tenmile Creek, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3066}, author = {Johnson, Orlay W. and Ruckelshaus, Mary H. and Grant, W. Stewart and Waknitz, F. William and Garrett, Ann M. and Bryant, Gregory J. and Neely, Kathleen and Hard, Jeffrey J. and Northwest Fisheries Science Center (U.S.),} } @book {36746, title = {Status review of coastal cutthroat trout from Washington, Oregon, and California}, series = {NOAA Technical Memorandum NMFS-NWFSC}, year = {1999}, note = {The Biological Review Team concluded that coastal stocks of cutthroat trout were not presently at risk of extinction. Appendix 1-A gives the known history of hatchery releases in streams and lakes.}, month = {1999}, publisher = {Northwest Fisheries Science Center}, organization = {Northwest Fisheries Science Center}, address = {[Seattle, Wash.]}, keywords = {Alsea Fish Hatchery, Alsea River, Chetco River, Coos Bay, Coos River, Coquille River, cutthroat trout = Oncorhynchus clarki, Devils Lake, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, history, Kilchis River, life history information, Miami River, Millicoma River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Rogue River, Salmon River, salmonid species, Sand Creek, Siltcoos Lake, Siuslaw River, Smith River, statistics, Tahkenitch Lake, Tenmile Creek, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3066}, author = {Johnson, Orlay W. and Ruckelshaus, Mary H. and Grant, W. Stewart and Waknitz, F. William and Garrett, Ann M. and Bryant, Gregory J. and Neely, Kathleen and Hard, Jeffrey J. and Northwest Fisheries Science Center (U.S.),} } @book {15831, title = {Bay Clam Data Series Report: 1998}, year = {1998}, note = { In addition to statistics on bay clams, the report includes information about a program to replant native Olympia oysters in Netarts and Alsea bays.}, month = {1998, Nov.}, pages = {18 p.}, publisher = {Oregon Dept. of Fish and Wildlife, Marine Region}, organization = {Oregon Dept. of Fish and Wildlife, Marine Region}, chapter = {18 pp.}, address = {Newport, Or.}, keywords = {Alsea Bay, aquaculture, aquatic invertebrates, biological, bivalves, Butter clam = Saxidomus giganteus, catch statistics, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille River estuary, Gaper clam = Tresus capax, introduced species, Littleneck clam = Leukoma staminea, Manila clam = Venerupis japonica, molluscs, Netarts Bay, Olympia oyste = Ostrea lurida (Ostrea conchaphila), recreational fisheries - shellfish, Siuslaw River estuary, Softshell clam = Mya arenaria, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/bv73c1123}, author = {Johnson, John A. and Oregon. Dept. of Fish and Wildlife,} } @book {15901, title = {Bay Clam Data Series Report: 1996}, year = {1997}, note = { In addition to statistics on bay clams, the report includes information about a program to replant native Olympia oysters in Netarts and Alsea bays and to enhance native oyster habitat in Yaquina Bay.}, month = {1997, Apr.}, pages = {18 p.}, publisher = {Oregon Dept. of Fish and Wildlife, Marine Region}, organization = {Oregon Dept. of Fish and Wildlife, Marine Region}, chapter = {18 pp.}, address = {Newport, Or.}, keywords = {Alsea Bay, aquaculture, aquatic invertebrates, biological, bivalves, Butter clam = Saxidomus giganteus, catch statistics, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille River estuary, Gaper clam = Tresus capax, introduced species, Littleneck clam = Leukoma staminea, Manila clam = Venerupis japonica, molluscs, Netarts Bay, Olympia oyste = Ostrea lurida (Ostrea conchaphila), recreational fisheries - shellfish, Siuslaw River estuary, Softshell clam = Mya arenaria, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/td96k337m}, author = {Johnson, John A. and Wood, Claire and Oregon. Dept. of Fish and Wildlife,} } @book {25546, title = {Oregon coastal salmon spawning surveys, 1994 and 1995}, series = {Information Reports / Fish Division, Oregon Department of Fish and Wildlife}, number = {no.97-5}, year = {1997}, month = {1997}, pages = {204 p.}, publisher = {Oregon Dept. of Fish and Wildlife, Fish Division}, organization = {Oregon Dept. of Fish and Wildlife, Fish Division}, address = {Portland, Or.}, keywords = {abundance, biological, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, geographical distribution, Pacific herring = Clupea pallasi, population biology, population count, reproductive behavior, salmonids, statistics, temporal distribution}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A45542}, author = {Jacobs, Steven E. and Cooney, Cedric X.} } @article {15946, title = {Bay Clam Data Series Report: 1995}, year = {1996}, note = {In addition to statistics on bay clams, the report includes information about a program to replant native Olympia oysters in Netarts and Alsea bays and to enhance native oyster habitat in Yaquina Bay.}, pages = {18 p.}, institution = {Oregon Dept. of Fish and Wildlife, Marine Region}, chapter = {18 pp.}, address = {Newport, Or.}, keywords = {Alsea Bay, aquaculture, aquatic invertebrates, biological, bivalves, Butter clam = Saxidomus giganteus, catch statistics, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille River estuary, Gaper clam = Tresus capax, introduced species, Littleneck clam = Leukoma staminea, Manila clam = Venerupis japonica, molluscs, Netarts Bay, Olympia oyste = Ostrea lurida (Ostrea conchaphila), recreational fisheries - shellfish, Siuslaw River estuary, Softshell clam = Mya arenaria, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/d791sg986}, author = {Johnson, John A. and Wood, Claire and Oregon. Dept. of Fish and Wildlife,} } @book {15986, title = {Bay Clam Data Series Report: 1994}, year = {1995}, note = {Much statistical information, including data from interviews with recreational clammers. }, pages = {20 p.}, publisher = {Oregon Dept. of Fish and Wildlife, Marine Region}, organization = {Oregon Dept. of Fish and Wildlife, Marine Region}, chapter = {20 pp.}, address = {Newport, Or.}, keywords = {Alsea Bay, aquaculture, aquatic invertebrates, biological, bivalves, Butter clam = Saxidomus giganteus, catch statistics, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille River estuary, Gaper clam = Tresus capax, introduced species, Littleneck clam = Leukoma staminea, Manila clam = Venerupis japonica, molluscs, Netarts Bay, recreational fisheries - shellfish, Siuslaw River estuary, Softshell clam = Mya arenaria, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/9593tv921}, author = {Johnson, John A. and Oregon. Dept. of Fish and Wildlife,} } @book {25391, title = {Oregon coastal salmon spawning surveys, 1993}, series = {Information Reports (Oregon. Fish Division)}, number = {95-3}, year = {1995}, note = {Numerous statistics.}, month = {1995}, pages = {103 p.}, publisher = {Oregon Dept. of Fish and Wildlife, Fish Division}, organization = {Oregon Dept. of Fish and Wildlife, Fish Division}, address = {Portland, Or.}, keywords = {abundance, Beaver Creek (Smith River), Buck Creek (Smith River), Coho salmon = Oncorhynchus kisutch, Dean Creek (Umpqua), Frozen Creek (South Umpqua), geographical distribution, Little South Fork Smith River, Miller Creek (Umpqua), North Myrtle Creek (South Umpqua), population biology, Quines Creek (South Umpqua), reproductive behavior, Scholfield Creek (Umpqua), statistics, temporal distribution}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A45538}, author = {Cooney, Cedric X. and Jacobs, Steven E.} } @proceedings {25406, title = {Summary of biological status review of Umpqua River sea-run cutthroat trout}, year = {1995}, note = {Winchester Dam fish counts show, "From 1946 to 1956, an average of 950 adults passed the dam per year. The run declined precipitously in the late 1950s, followed by a sharp increase in the 1960s and early 1970s during the period when natural fish were supplemented with hatchery releases. In the late 1970s, the run precipitously declined again, and has averaged only 62 adults per year since 1977." (Abstract, p.87) This species was listed as endangered in August, 1966.}, pages = {p.87-102}, publisher = {Oregon Chapter of the American Fisheries Society}, address = {Reedsport, Oregon}, keywords = {Alsea Fish Hatchery, Calapooya Creek, Canton Creek, Canyon Creek, Cavitt Creek, climate, Copeland Creek, Cow Creek, Cutthroat trout = Oncorhynchus clarki clarki, dams, depressed populations, Elk Creek, fecundity, Fish Lake, general ecosystem description, genetics, hatcheries, hybridization, hydrology, Lake Creek, Lemolo Lake, life history information, Little River, Lower Umpqua River, Maideu Lake, North Umpqua River, population biology, population count, reproductive behavior, Scholfield Creek, Smith River, South Umpqua River, Steamboat Creek, Sutherlin Creek, Umpqua River Basin, water temperature, Winchester Dam}, isbn = {0913235997}, author = {Johnson, Orlay W. and Waples, Robin S. and Wainwright, Thomas C. and Neely, Kathleen G. and Waknitz, F. William and Parker, L. Ted}, editor = {Hall, J. D. and Bisson, P. A. and Gresswell, R. E.} } @article {83081, title = {Bay Clam Data Series Report: 1993}, year = {1994}, note = { In addition to statistics on bay clams, the report mentions an effort to plant native (Olympia) oysters (Ostrea lurida / Ostrea conchaphila) in Netarts Bay.}, pages = {17 p.}, institution = {Oregon Department of Fish and Wildlife}, address = {Newport, Or.}, keywords = {Alsea Bay, aquatic invertebrates, biological, bivalves, Butter clam = Saxidomus giganteus, catch statistics, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille River estuary, Gaper clam = Tresus capax, Littleneck clam = Leukoma staminea, molluscs, Nehalem Bay, Netarts Bay, Olympia oyster = Ostrea conchaphila (Ostrea lurida), recreational fisheries - shellfish, Siuslaw Bay, Softshell clam = Mya arenaria, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/db78tc82t}, author = {Johnson, John A. and Oregon. Dept. of Fish and Wildlife,} } @book {25306, title = {Oregon coastal salmon spawning surveys, 1992}, series = {Information Reports / Fish Division, Oregon Department of Fish and Wildlife}, number = {94-2}, year = {1994}, note = {Numerous statistics: estimates of the stock, spawning counts, peak spawning counts. }, month = {1994}, pages = {103 o.}, publisher = {Oregon Dept. of Fish and Wildlife, Fish Division}, organization = {Oregon Dept. of Fish and Wildlife, Fish Division}, address = {Portland, Or.}, keywords = {abundance, Beaver Creek (Smith River), Buck Creek (Smith River), Coho salmon = Oncorhynchus kisutch, Dean Creek (Umpqua), Frozen Creek (South Umpqua), geographical distribution, Little South Fork Smith River, Miller Creek (Umpqua), North Myrtle Creek (South Umpqua), population biology, Quines Creek (South Umpqua), reproductive behavior, Scholfield Creek (Umpqua), statistics, temporal distribution, Weatherly Creek (Umpqua)}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A45540}, author = {Cooney, Cedric X. and Jacobs, Steven E.} } @book {25351, title = {Status review for Oregon{\textquoteright}s Umpqua River sea-run cutthroat trout}, series = {NOAA Technical Memorandum NMFS-NWFSC}, number = {15}, year = {1994}, note = {"Although the pattern of abundance and tag/recovery data during the period of supplementation indicated that Alsea River hatchery fish returned as adults to Winchester Dam in some numbers, it is apparent that 15 years of hatchery releases did not result in a viable, self-sustaining population of naturally spawning fish. The unresolved issue is, What do the few remaining anadromous O. clarki represent: remnants of the original Umpqua River gene pool, descendants of the Alsea River hatchery fish, or a mixed lineage? The run-timing shift suggested that an indigenous component may remain." (from the Abstract) This publication discusses the issues surrounding a possible listing of Umpqua River sea-run cutthroat trout. The species was listed as endangered in August, 1996.}, month = {1994}, pages = {122 p.}, publisher = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, organization = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, address = {Seattle, Wash.}, keywords = {Alsea Fish Hatchery, Calapooya Creek, Canton Creek, Canyon Creek, Cavitt Creek, Copeland Creek, Cow Creek, Cutthroat trout = Oncorhynchus clarki clarki, Diamond Lake, Elk Creek, endangered species, genetics, hatcheries, history, Lake Creek, Lemolo Lake, life history information, Little River, natural resource management, North Umpqua River, population biology, population count, Rock Creek, salmonid species, Scholfield Creek, Smith River, South Umpqua River, statistics, Steamboat Creek, Sutherlin Creek, Umpqua River, Umpqua River Basin, Winchester Dam}, url = {https://repository.library.noaa.gov/view/noaa/6171}, author = {Johnson, Orlay W. and Waples, Robin S. and Wainwright, Thomas C. and Neely, Kathleen G. and Waknitz, F. William and Parker, L. Ted} } @book {25231, title = {Oregon coastal salmon spawning surveys, 1991}, series = {Information Reports / Fish Division, Oregon Department of Fish and Wildlife}, number = {no.93-1}, year = {1993}, note = {Numerous statistics: estimates of the stock, spawning counts, peak spawning counts. }, month = {1993}, pages = {81 p.}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {Portland, Or.}, keywords = {abundance, Beaver Creek (Smith River), Buck Creek (Smith River), Coho salmon = Oncorhynchus kisutch, Dean Creek (Umpqua), Frozen Creek (South Umpqua), geographical distribution, Little South Fork Smith River, Miller Creek (Umpqua), North Myrtle Creek (South Umpqua), population biology, Quines Creek (South Umpqua), reproductive behavior, Scholfield Creek (Umpqua), statistics, temporal distribution, Weatherly Creek (Umpqua)}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A45541}, author = {Cooney, Cedric X. and Jacobs, Steven E.} } @book {25186, title = {Bay Clam Data Series Report: 1991}, year = {1992}, note = {Much statistical information, including data from interviews with recreational clammers. }, pages = {33 p.}, publisher = {Oregon Dept. of Fish and Wildlife, Marine Region}, organization = {Oregon Dept. of Fish and Wildlife, Marine Region}, address = {Newport, Or.}, keywords = {Alsea Bay, aquaculture, aquatic invertebrates, biological, bivalves, Bolin Island, Butter clam = Saxidomus giganteus, catch statistics, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille River estuary, Gaper clam = Tresus capax, introduced species, Littleneck clam = Leukoma staminea, Manila clam = Venerupis japonica, molluscs, Nestucca Bay, Netarts Bay, recreational fisheries - shellfish, Siuslaw River estuary, Softshell clam = Mya arenaria, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/7s75dd16p}, author = {Johnson, John A. and McCrae, Jean and Oregon. Dept. of Fish and Wildlife,} } @article {25191, title = {Bay Clam Data Series Report: 1992}, year = {1992}, note = {This report, primarily intended as an internal document for ODFW staff, is concerned with commercial clam fisheries. Tables give harvest statistics for commercial clam harvests for 1970-1992, in pounds, species and estuaries where clams were harvested. No data for recreational fisheries are given.}, pages = {4 p.}, institution = {Oregon Department of Fish and Wildlife}, address = {Newport, Or.}, keywords = {Alsea Bay, aquatic invertebrates, biological, bivalves, Butter clam = Saxidomus giganteus, catch statistics, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille River estuary, Gaper clam = Tresus capax, Littleneck clam = Leukoma staminea, molluscs, Nehalem Bay, Netarts Bay, Siuslaw Bay, Softshell clam = Mya arenaria, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/v979v373w}, author = {Johnson, John A. and McCrae, Jean and Oregon. Dept. of Fish and Wildlife,} } @book {25166, title = {Oregon coastal salmon spawning surveys, 1990}, series = {Information Reports / Fish Division, Oregon Department of Fish and Wildlife}, number = {92-2}, year = {1992}, note = {Numerous statistics: estimates of the stock, spawning counts, peak spawning counts.}, month = {1992}, pages = {73 p.}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {Portland, Or.}, keywords = {abundance, Beaver Creek (Smith River), Buck Creek (Smith River), Coho salmon = Oncorhynchus kisutch, Dean Creek (Umpqua), Frozen Creek (South Umpqua), geographical distribution, Little South Fork Smith River, Miller Creek (Umpqua), North Myrtle Creek (South Umpqua), population biology, Quines Creek (South Umpqua), reproductive behavior, Scholfield Creek (Umpqua), statistics, temporal distribution, Weatherly Creek (Umpqua)}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A45539}, author = {Cooney, Cedric X. and Jacobs, Steven E.} } @article {25206, title = {Seasonal changes in habitat use by juvenile coho salmon (Oncorhynchus kisutch) in Oregon coastal streams}, journal = {Canadian Journal of Fisheries and Aquatic Sciences}, volume = {49}, number = {4}, year = {1992}, month = {1992}, pages = {p.783-789}, keywords = {Coho salmon = Oncorhynchus kisutch, geographic distribution, habitats, temporal distribution, Umpqua River Basin}, isbn = {0706-652X}, author = {Nickelson, Thomas E. and Rodgers, Jeffrey D. and Johnson, Steven L. and Solazzi, Mario F.} } @article {25201, title = {Status of Anadromous Salmonids in Oregon Coastal Basins}, year = {1992}, note = {At the time of this publication, the Umpqua{\textquoteright}s population of wild coho salmon was considered "Depressed." Special concern was noted regarding the North Fork of the Umpqua River because of hatchery strays. The wild fall Chinook population was deemed "Healthy." Chum salmon populations on the Lower Umpqua River and the Smith River were of "Special Concern," and biologists noted that they may not be "valid population[s]." The status of the wild winter steelhead population on the Smith River was judged "Depressed," while the run on the North Fork of the Umpqua River was "Healthy." The summer steelhead run on the North Fork Umpqua River was also "Healthy."}, pages = {83 p.}, institution = {Oregon Dept. of Fish and Wildlife}, keywords = {Alsea River, Beaver Creek, Chetco River, Chinook salmon = Oncorhynchus tshawytscha, chum salmon = Oncorhynchus keta, Coho salmon = Oncorhynchus kisutch, Coos River, Coquille River, cutthroat trout = Oncorhynchus clarki, depleted populations, hatchery salmonids, Kilchis River, life history information, Miami River, Necanicum River, Nehalem River, Nestucca River, Rogue River, Salmon River, Siletz River, Siltcoos River, Siuslaw River, Sixes River, Smith River, statistics, steelhead trout = Oncorhynchus mykiss, Tahkenitch Creek, Tenmile Creek, Tillamook Bay, Tillamook River, Trask River, Umpqua River, wild salmonids, Wilson River, Yachats River, Yaquina River}, author = {Nickelson, Thomas E. and Nicholas, Jay W. and McGie, Alan M. and Lindsay, Robert B. and Bottom, Daniel L. and Kaiser, Rodney J. and Jacobs, Steven E.} } @book {24996, title = {Oregon Coastal Salmon Spawning Surveys, 1989/1990}, year = {1990}, note = {Numerous statistics: estimates of the stock, spawning counts, peak spawning counts.}, month = {1990}, pages = {67 p.}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {Portland, Or.}, keywords = {abundance, Beaver Creek (Smith River), Buck Creek (Smith River), Coho salmon = Oncorhynchus kisutch, Dean Creek (Umpqua), Frozen Creek (South Umpqua), geographical distribution, Little South Fork Smith River, Miller Creek (Umpqua), North Myrtle Creek (South Umpqua), population biology, Quines Creek (South Umpqua), reproductive behavior, Scholfield Creek (Umpqua), statistics, temporal distribution, Weatherly Creek (Umpqua)}, author = {Cooney, Cedric X. and Jacobs, Steven E.} } @article {25006, title = {Umpqua River Smallmouth Bass Investigation, 1987-1988}, year = {1990}, note = {This report evaluates methods of fish sampling. It includes population size, density/structure, mortality rates, and age/growth data regarding smallmouth bass. See also: Umpqua River smallmouth bass investigation, 1990 (1991).}, month = {1990}, pages = {46 p.}, institution = {Oregon Dept. of Fish and Wildlife}, keywords = {age composition, Cow Creek, geographic distribution, habitats, introduced species, juvenile fish, population biology, recreational fisheries, Smallmouth Bass = Micropterus dolomieu, South Umpqua River, Umpqua River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/p8418n98g}, author = {Daily, Kim and Perkins, Ray and Johnson, John} } @book {24936, title = {Oregon Coastal Salmon Spawning Surveys, 1986/1989}, year = {1989}, note = {ODFW Progress Report}, month = {1989}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {Portland, Or.}, keywords = {abundance, biological, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, geographical distribution, Pacific herring = Clupea pallasi, population biology, population count, reproductive behavior, salmonids, temporal distribution}, author = {Jacobs, Steven E.} } @book {24876, title = {Oregon Coastal Salmon Spawning Surveys, 1985}, year = {1988}, note = {ODFW Progress Report}, month = {1988, Sep.}, pages = {61 p.}, publisher = {Oregon Dept. of Fish and Wildlife, Fish Division}, organization = {Oregon Dept. of Fish and Wildlife, Fish Division}, address = {Portland, Or.}, keywords = {abundance, biological, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, geographical distribution, Pacific herring = Clupea pallasi, population biology, population count, reproductive behavior, salmonids, temporal distribution}, author = {Jacobs, Steven E.} } @book {24751, title = {The seasonal occurrence and distribution of fish in the Umpqua Estuary, April 1977 through January 1986}, series = {Information Reports (Oregon. Fish Division)}, number = {86-6}, year = {1986}, month = {1986}, pages = {10 p.}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {Portland, Or.}, keywords = {catch statistics, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, English sole = Parophrys vetulus, Pacific herring = Clupea pallasi, Pacific staghorn sculpin = Leptocottus armatus, Scholfield Creek, shiner perch = Cymatogaster aggregata, Smith River, spatial distribution, species composition, species list, speckled sanddab = Citharichthys stigmaeus, Starry flounder = Platichthys stellatus, Surf smelt = Hypomesus pretiosis, temporal distribution, Three-spined stickleback = Gasterosteus aculeatus, Umpqua pikeminnow = Ptychocheilus umpquae, Umpqua River, Umpqua River estuary}, url = {https://tinyurl.com/2p8ram7p}, author = {Johnson, John A.} } @article {24706, title = {American shad from an Oregon river -- the Umpqua}, journal = {Oregon Wildlife}, volume = {40}, number = {3}, year = {1985}, note = {Brief popular article about the shad fishery on the Umpqua.}, pages = {p.12-13}, keywords = {American shad = Alosa sapidissima, South Umpqua River, Umpqua River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/cz30pt87w}, author = {Johnson, John A.} } @article {24691, title = {A Baseline Survey of Fish and Invertebrates in the Lower Umpqua River Estuary, Oregon: Draft}, year = {1985}, note = {"A baseline survey of fish and macroinvertebrates was completed between March and August, 19b3, prior to the disposal of seafood processing wastes in the lower Urnpqua River estuary, Oregon." (from the Abstract) This manuscript was widely distributed, but the final report was not completed (personal communication, Daniel L. Bottom).}, pages = {80 p.}, keywords = {amphipods, Baltic clam = Macoma balthica, bivalves, Chinook almon = Oncorhynchus tshawytscha, Corophium salmonis, English sole = Parophrys vetulus, Eogammarus confervicolus, fishes, Lower Umpqua River, Mediomastus californiensis, Pacific staghorn sculpin = Leptocottus armatus, polychaete worms, Pygospio elegans, Scoloplos armaceps, seafood processing, sediments, Shiner perch = Cymatogaster aggregate, species list, Starry flounder = Platichthys stellatus, tidal currents, waste disposal, water pollution, water quality}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/zp38wd21g}, author = {Bottom, Daniel L. and Miller, Bruce A. and Jones, Kim K. and Oregon. Dept. of Fish and Wildlife. Research and Development Section,} } @article {24596, title = {A history of coho fisheries and management in Oregon through 1982}, volume = {no.84-12}, year = {1983}, note = {Good overview of the history of the Oregon coho salmon fisheries, their management, and attempts to improve returns. Many charts and tables.}, pages = {78 p.}, institution = {Fish Division, Oregon Dept. of Fish and Wildlife}, address = {Corvallis, Or.}, keywords = {Alsea River, catch data, Coho salmon = Oncorhynchus kitsutch, Columbia River, commercial fisheries - salmon, Coos Bay, Coquille River, historical, human impacts, Native Americans, Nehalem River, Nestucca River, recreational fisheries - salmon, Rogue River, Salmon River, Siletz River, Siuslaw River, statistics, Tillamook Bay, Umpqua River, Yaquina River}, url = {https://library.state.or.us/repository/2011/201108101438393/}, author = {Johnson, Karen} } @article {24476, title = {Oregon coastal salt marsh upper limits and tidal datums}, journal = {Estuaries}, volume = {4}, number = {3}, year = {1981}, note = {General reference chiefly concerned with plant species distribution in marshes of Yaquina, Alsea and Coos estuaries. Some additional information about the Coquille River (Bandon Marsh) and Nehalem Bay.}, month = {1981, Sep.}, pages = {p.198-205}, keywords = {marshes, plant species, tides, zonation}, author = {Frenkel, Robert E. and Eilers, H. Peter and Jefferson, Carol A.} } @article {83280, title = {Logging, infiltration capacity, and surface erodibility in Western Oregon}, journal = {Journal of Forestry.}, volume = {78}, number = {6}, year = {1980}, pages = {p.334-337}, keywords = {Coyote Creek, erosion, H-15 Watersheds, H.J. Andrews Experimental Forest, landslides, logging, sediments, soils, South Umpqua Experimental Forest, Willamette and Umpqua National Forests}, author = {Johnson, Michael G. and Beschta, Robert L.} } @book {24186, title = {An Economic Evaluation of Salmonid Fisheries Attributable to Siuslaw National Forest}, year = {1976}, month = {1976}, pages = {12 p.}, publisher = {United States Forest Service, Pacific Northwest Region}, organization = {United States Forest Service, Pacific Northwest Region}, address = {Corvallis, Or.}, keywords = {economics, hatchery salmonids, Siuslaw National Forest, wild salmonids}, author = {Kunkel, Clair and Janik, Phil and U.S. Forest Service. Pacific Northwest Region, and Oregon. Siuslaw National Forest} } @mastersthesis {24076, title = {Plant Communities and Succession in Oregon Coastal Salt Marshes}, year = {1975}, note = {An important work. See also the related map, Salt Marsh Vegetation Map of the Umpqua River (1973). Major professor was William W. Chilcote. }, month = {1974, Aug.}, pages = {192 p.}, school = {Botany, Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Botany and Plant Pathology}, address = {Corvallis, Or.}, keywords = {marshes, terrestrial vegetation, theses, Umpqua River estuary, vertical distribution, wetland delineation, wetland vegetation. zonal distribution}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/2v23vx42t}, author = {Jefferson, Carol A.} } @book {23901, title = {Coastal Wetlands of Oregon}, year = {1973}, note = {Excellent photographs and maps}, month = {1973, Aug.}, pages = {159 p.}, publisher = {Oregon Coastal Conservation and Development Commission}, organization = {Oregon Coastal Conservation and Development Commission}, keywords = {marshes, wetland delineation, wetland vegetation}, author = {Atkins, Glenn J. and Jefferson, Carol A.} } @article {23926, title = {Salt Marsh Vegetation Map of the Umpqua River}, year = {1973}, note = {One of a set of 13 maps. Salt water vegetation hand drawn using Oregon Division of State Lands 1973 Tideland Maps as a base. Vegetation classification appears in Carol A. Jefferson{\textquoteright}s Ph.D. dissertation "Plant communities and succession in Oregon Coastal Salt Marshes, August 1, 1974". }, month = {1973}, address = {[Florence, Or.] }, keywords = {Black{\textquoteright}s Island, Bolon Island, Butler Creek, Goose Island, maps, marshes, Providence Creek, Scholfield Creek, Smith River, The Point, Umpqua River, Umpqua River estuary, wetland delineation, wetland vegetation}, url = {https://oregondigital.org/catalog/oregondigital:fx71d0695}, author = {Jefferson, Carol A.} } @article {23876, title = {Tidal inlets on the California, Oregon and Washington coasts}, volume = {no.24-12}, year = {1972}, note = {"HEL-24-12." This title is available online to subscribers of Hathi Trust.}, institution = {Hydraulic Engineering Laboratory, University of California}, address = {Berkley, CA}, keywords = {Alsea River estuary, Chetco River estuary, Columbia River estuary, Coos River estuary, Coquille River estuary, Necanicum River estuary, Nehalem River estuary, Nestucca River estuary, Netarts estuary, physical, Rogue River estuary, Siletz River estuary, Siuslaw River estuary, tidal currents, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, author = {Johnson, J. W. and University of California, Berkeley. Hydraulic Engineering Laboratory.,} } @book {23786, title = {Aerial Photographic Tracing of Pulp Mill Effluent in Marine Water}, year = {1970}, note = {Photographs}, month = {August_1970}, pages = {152 p.}, publisher = {Federal Water Quality Administration. U.S. Department of the Interior.}, organization = {Federal Water Quality Administration. U.S. Department of the Interior.}, keywords = {bioassay, computer programs, hydrology, mathematical modeling, outfall, physical, pulp mill effluent, remote sensing, tidal currents, Toledo, toxicity, Umpqua River estuary, waste disposal, water pollution, water temperature data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/dr26xz07b}, author = {Burgess, Fred J. and James, Wesley P. and U.S. Department of the Interior. Federal Water Quality Administration, and Oregon State University} } @book {83006, title = {The stoneflies (Plecoptera) of the Pacific Northwest}, series = {Oregon State Monographs. Studies in Entomology }, volume = {no.3}, year = {1959}, note = {Stoneflies are aquatic insects living in cool, well-oxygenated streams. They are sensitive to the presence of pollutants, and their presence is a valuable indicator of good water quality. They are important food sources for fish, particularly trout. This classic guide includes a dichotomous key and numerous illustrations to help identify species. Note: species names may have changed since this publication was written.}, pages = {85 p.}, publisher = {Oregon State University}, organization = {Oregon State University}, chapter = {95 p.}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, general, geographic distribution, insects, life history, stoneflies, taxonomy}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/sf268986j }, author = {Jewett, Stanley Gordon, Jr.} } @article {22986, title = {Water-power resources of the Umpqua River and its tributaries, Oregon}, number = {636}, year = {1930}, note = {Dual series: also called Contributions to the hydrology of the United States, 1929}, month = {1930}, pages = {110 p.}, institution = {U.S. Geological Survey}, address = {Reston, Va.}, keywords = {dams, hydrology, North Umpqua River, Smith River, South Umpqua River, streamflow, Umpqua River}, doi = {https://doi.org/10.3133/wsp636F }, url = {https://pubs.usgs.gov/wsp/0636f/report.pdf}, author = {Jones, Benjamin Earl and Stearns, Harold Thornton} }